Oamaru Diatoms
Scanning Electron Microscope Images
by Mary Ann Tiffany

bains2_orig.jpg
Seam of Diatomite Adjacent to Collection Outcrop

Update June 2023. This earlier html version retained for issue archive but has been replaced by a pdf version here where nearly all species have been identified.

Introduction

The rolling hills near the town of Oamaru, on the east coast of the South Island of New Zealand, are famous for their beds of Late Eocene-Early Oligocene diatomite, laid down about 32-35 million years ago. The beds are exposed at several sites sandwiched between igneous and limestone layers on farms around Oamaru (Dailey 2004). While the rolling hills of the Oamaru region are not especially remarkable, the diatomite found there is quite remarkable indeed! Some people mine the diatomite for products such as kitty litter while some of us appreciate these fossil beds for learning.

The climate during this period was much warmer than now with tropical seas dominating the planet, tropical forest common on land, and temperate forests reaching all the way to near the North and South Poles.

The beds were deposited in a shallow, tropical sea rich in nutrients which encouraged successive plankton blooms. The diatom flora speciated wildly, resulting in the fantastic diversity found in the diatomite, including some of the most exotic marine forms in the world. The beds are believed to have formed in a quiet basin about 50 kilometers offshore that received very little terrestrial sediment. The silica skeletons of the diatoms fell on the sea floor and were covered and compressed by overlying layers of plankton to form the soft rock, diatomite. Subsequently, they were covered by volcanic deposits and earth movements. Remarkably, many of these diatoms remain intact and perfectly preserved over many millions of years.

This speciation resulted in perhaps the most diverse fossil marine diatom community ever recorded with over 700 species from about 120 genera. A few species have been recorded only from Oamaru (e.g. species of Kittonia). Others are known from widely dispersed Eocene-Oligocene fossil sites around the world, such as Barbados, providing evidence that tropical seas were interconnected during these epochs. Some species are still living today. (Richman & Carter 2007, Charles 2017, Edwards 1991)

The specimens in this collection came from Bain's Farm near Oamaru in New Zealand (lat -45.100657 lon 170.888204, elevation ~ 100 meters). In 2003, friends of Bill Dailey collected samples at the outcrop of diatomite shown at the arrow in the illustration. Bill cleaned the samples and sent material to Mary Ann Tiffany (then at the Center for Inland Waters and Department of Biology of San Diego State University, California, US) who made the images in this collection. This web page is a tribute to their work.

This selection of images is certainly not an exhaustive inventory of Oamaru diatoms but it contains studies of genera such as Kittonia, Gyrosigma, and Aulacodiscus.

The Group column contains names adapted from the morphological groups used on Diatoms of North America. Centric diatoms have been split into radial and polar groups. Some genera defy these categories. For example, Stictodiscus is assigned to centric radials but contains members that have definite poles. The Name column contains our attempts to identify the diatoms. (Names are without italics for faster sorting.) Several specimens are identified to genus with a provisional species identifier until more is learned. In the file name below the image, the number stands for the magnification, "tilt" signifies that the specimen was tilted at 45 degrees in the SEM, and a letter before "tilt" or the magnification in a group of images denotes the same specimen. The Comment column contains our observations about the specimen.

Sorting columns can be done in several ways. (1) Sort Group or Name by clicking on the heading. Click again to the reverse the sort. Sorting by Name may be the most useful since it puts all those with the same name together. (2) Sort on two columns by arranging the second column of the sort, then arrange the first column. (3) Restore the file name order by reloading the page.

For a larger image, click on an image in the gallery. It will open in a separate tab, allowing several images to be open at once. This window also contains the references for the specimen. Click the X or press Esc to close the image.

The species list, arranged by Name and Group, can be found here. See the Appendix for abbreviations used in the names.

A Sense of Scale
Magnification is the last part of the file name below each image.
Image widths in microns (µm), rounded to nearest whole number.
Magnification 200 250 300 350 400 450 500 600 700 800 900 1000 1100
Width (µm) 583 467 389 333 292 260 233 194 167 146 130 117 106
Magnification 1300 1500 1800 2000 2500 3000 3500 4000 4500 5000 6000 7000
Width (µm) 90 78 65 58 47 39 33 29 26 23 19 17
Group Name Image Comment
Centric RadialAsterolampra insignis (I)
Centric RadialAsterolampra insignis (I)
Centric RadialAsterolampra insignis (I)
Centric RadialAsterolampra vulgaris (I)
Centric PolarKittonia elaborata
Centric PolarKittonia elaborata
Centric PolarKittonia elaborata
Centric RadialBrightwellia coronata
Centric RadialBrightwellia coronata
Centric RadialAsterolampra vulgaris (E)
Centric RadialAsterolampra vulgaris (E)
Centric RadialAsterolampra vulgaris (E)
Centric RadialAsterolampra vulgaris (E)
Centric RadialStictodiscus californicus var. nitida
Centric RadialAulacodiscus cellulosus
Centric RadialAulacodiscus cellulosus
Centric RadialAulacodiscus cellulosus
Centric RadialAulacodiscus cellulosus
Centric RadialAulacodiscus cellulosus
Centric RadialAulacodiscus sollittianus var. novaezealandica
Centric RadialAulacodiscus sollittianus var. novaezealandica
Centric RadialAulacodiscus sollittianus var. novaezealandica
Centric RadialAulacodiscus sollittianus var. novaezealandica
Centric RadialAulacodiscus cellulosus
Centric RadialAulacodiscus cellulosus
Centric PolarKittonia elaborata
Centric PolarKittonia elaborata
Centric PolarKittonia elaborata
Centric PolarKittonia elaborata
Centric PolarKittonia elaborata
Centric PolarKittonia elaborata
Centric PolarKittonia elaborata
Centric PolarKittonia elaborata
Centric PolarKittonia elaborata
Centric PolarKittonia elaborata
Centric RadialAsterolampra insignis (E)
Centric RadialAsterolampra insignis (E)
Centric RadialAsterolampra insignis (E)
Centric RadialAsterolampra insignis (E)
Centric RadialAsterolampra insignis (E)
Centric PolarTriceratium secedens
Centric RadialAulacodiscus cellulosus
Centric RadialAulacodiscus cellulosus
Centric RadialAulacodiscus cellulosus
Centric RadialAulacodiscus cellulosus
Centric RadialAulacodiscus janischii
Centric RadialAulacodiscus janischii
Centric RadialAulacodiscus janischii
Centric RadialAulacodiscus janischii
Centric RadialAulacodiscus janischii
Centric RadialAulacodiscus janischii
Centric PolarSheshukovia castellifera
Centric PolarSheshukovia castellifera
Centric RadialAulacodiscus amoenus
Centric RadialAulacodiscus amoenus
Centric RadialAulacodiscus amoenus
Centric RadialAulacodiscus amoenus
Centric RadialAulacodiscus amoenus
Centric PolarKittonia elaborata
Centric RadialAulacodiscus janischii
Centric RadialAulacodiscus janischii
Centric RadialAulacodiscus sollittianus var. novaezealandica
Centric RadialAulacodiscus sollittianus var. novaezealandica
Centric RadialAulacodiscus sollittianus var. novaezealandica
Centric PolarSheshukovia castellifera
Centric RadialEllerbeckia clavigera
Centric RadialEllerbeckia clavigera
Centric RadialEndictya oceanica
Centric PolarTriceratium castellatum var. fractum
Centric PolarTriceratium castellatum var. fractum
Centric PolarTriceratium castellatum var. fractum
Centric PolarKittonia elaborata
Centric PolarKittonia elaborata
Centric PolarKittonia elaborata
Centric PolarKittonia elaborata
Centric PolarRutilaria radiata
Centric PolarRutilaria radiata
Centric PolarRutilaria radiata
Centric PolarRutilaria radiata
Centric PolarRutilaria radiata
Centric PolarRutilaria radiata
Centric PolarRutilaria radiata
Centric RadialEndictya sp1
Centric PolarEntogoniopsis venosa
Centric PolarRutilaria radiata
Centric PolarRutilaria radiata
Centric PolarRutilaria radiata
Centric PolarRutilaria radiata
Centric RadialBrightwellia coronata
Centric RadialAsterolampra insignis (I)
Centric RadialStephanopyxis sp1
Centric RadialArachnoidiscus oamaruensis
Biraphid SymmetricalGyrosigma sp1
Biraphid SymmetricalGyrosigma sp1
Biraphid SymmetricalGyrosigma sp1
Centric RadialHyalodiscus laevis
Centric RadialHyalodiscus laevis
Centric RadialHyalodiscus laevis
Centric PolarTrinacria excavata
Centric PolarTrinacria excavata
Centric PolarTrinacria excavata
Centric RadialAsterolampra vulgaris (E)
Centric PolarHemiaulus sp1
Centric PolarPyxilla prolungata
Centric PolarWilliamriedelia tenuicornis
Centric RadialPodosira corolla
Centric RadialBrightwellia coronata
Centric RadialPodosira corolla
Centric RadialCestodiscus spinifer
Centric PolarTriceratium pulvinar
Centric PolarTriceratium pulvinar
Centric PolarHemiaulus sp1
Centric RadialPodosira corolla
Centric PolarEntogoniopsis pseudonervata
Centric RadialCestodiscus spinifer
Centric RadialCestodiscus spinifer
Centric RadialCestodiscus spinifer
Centric PolarTriceratium favus var. quadrata
Centric PolarTriceratium favus var. quadrata
Centric PolarTriceratium favus var. quadrata
Centric PolarTriceratium favus var. quadrata
Centric PolarTriceratium favus var. quadrata
Centric RadialAulacodiscus cellulosus
Centric RadialAulacodiscus cellulosus
Centric RadialAulacodiscus cellulosus
Centric RadialAsterolampra insignis (I)
Centric RadialAsterolampra insignis (I)
Centric RadialAsterolampra vulgaris (I)
Centric RadialAsterolampra vulgaris (I)
Centric RadialAsterolampra vulgaris (I)
Centric RadialAsterolampra vulgaris (I)
Centric RadialAsterolampra vulgaris (I)
Centric RadialAsterolampra vulgaris (E)
Centric RadialAulacodiscus aemulans
Centric RadialAulacodiscus aemulans
Centric RadialAulacodiscus aemulans
Centric RadialAulacodiscus aemulans
Centric RadialStictodiscus novaezealandiae
Centric RadialStictodiscus novaezealandiae
Centric RadialStictodiscus novaezealandiae
Centric RadialAulacodiscus janischii
Centric RadialAulacodiscus janischii
Centric RadialAulacodiscus janischii
Centric RadialAulacodiscus janischii
Centric PolarTriceratium castellatum var. fractum
Centric PolarGoniothecium decoratum
Centric PolarTrinacria ventricosa
Centric PolarTrinacria ventricosa
Centric PolarTrigonium glandiferum
Centric PolarTrigonium glandiferum
Centric PolarHemiaulus sp1
Centric PolarTriceratium favus var. quadrata
Centric PolarTriceratium favus var. quadrata
Centric PolarTriceratium favus var. quadrata
Centric RadialAsterolampra insignis (I)
Centric RadialAsterolampra insignis (I)
Centric RadialAsterolampra vulgaris (E)
Centric RadialAsterolampra vulgaris (E)
Centric RadialAsterolampra vulgaris (E)
Centric RadialAsterolampra vulgaris (E)
Centric RadialAsterolampra vulgaris (E)
Centric RadialAsterolampra vulgaris (E)
Centric RadialAsterolampra vulgaris (I)
Centric RadialAsterolampra vulgaris (I)
Centric RadialAsterolampra vulgaris (I)
Centric RadialAsterolampra vulgaris (I)
Centric RadialAsterolampra vulgaris (I)
Centric RadialStictodiscus splendidus
Centric RadialStictodiscus splendidus
Centric RadialStephanopyxis sp2
Centric RadialStephanopyxis sp3
Centric RadialCoscinodiscus subdivicus
Centric RadialAulacodiscus aemulans
Centric RadialAulacodiscus aemulans
Centric RadialAulacodiscus aemulans
Centric RadialAulacodiscus aemulans
Centric RadialEllerbeckia clavigera
Centric RadialEllerbeckia clavigera
Centric RadialStephanopyxis sp2
Centric RadialPodosira corolla
Centric RadialPodosira corolla
Centric RadialStephanopyxis sp3
Centric RadialEllerbeckia sp1
Centric RadialEllerbeckia sp1
Centric RadialStephanopyxis sp4
Centric RadialPodosira corolla
Centric RadialEllerbeckia clavigera
Centric RadialCoscinodiscus subdivicus
Centric PolarTriceratium pantocsekii
Centric RadialCoscinodiscus argus
Centric RadialStrangulonema barbadense
Centric PolarRattrayella oamaruensis
Centric PolarRattrayella oamaruensis
Centric PolarRattrayella oamaruensis
Centric PolarRattrayella oamaruensis
Centric RadialBrightwellia coronata
Centric RadialEllerbeckia clavigera
Centric PolarEntogoniopsis venosa
Centric PolarEntogoniopsis venosa
Acknowledgements

Bill Dailey (US) provided the single list of the images used for the gallery. Rob Kimmich (US) provided text and code for the page. Mary Ann Tiffany (US) provided the images, magnification table, identifications, as well as the inspiration to attempt this project. David Walker (UK) hosted the project on Micscape Magazine. Bill and David provided testing and comments on design and content. These collaborators are members of Diatom Forum. Jakub Witkowski (University of Szczecin, Poland) helped greatly with naming specimens and provided insights into problems of working with fossil diatoms.

Appendices
Appendix I

Several abbreviations are used in the names on this web page (Wikipedia 2023).

var. variety (in Latin, varietas) is a taxonomic rank below species and subspecies, but above form.

f. form (in Latin, forma) is one of the secondary taxonomic ranks and is placed below variety which is below species. It is an infraspecific taxon. If more than three ranks are listed in describing a taxon, this is the "classification" of the taxon. The "name" of the taxon may be reduced to only three parts: a genus name, a specific epithet, and an infraspecific epithet (such as var. or f.).

Appendix II

Version 1 was started in February 2023 and completed in March 2023. This is Version 2. It was started in March 2023 and completed in May 2023. It contains name changes, puts the references in the enlargement window that is reached by clicking an image.

References

As often happens, diatom references may be out of print or behind various pay walls, though some may be in the public domain. Authors are often willing to share copies of their work.

Brown, N.E. (1933) Arachnoidiscus. Watson & Sons, Ltd, London. http://www.microscopy-uk.org.uk/diatomist/Arachnoidiscus.pdf.

Charles, Nigel (2017). Oamaru diatoms. https://www.oamarudiatoms.co.uk/index.html. [Nigel died in 2018. His website is now maintained by Anne Gleich.]

Crawford, R.[M.] & Sims, P.A. (2006). The diatoms Radialiplicata sol (Ehrenberg) Glezer and R. clavigera (Grunow) Glezer and their transfer to Ellerbeckia Crawford, thus a genus with freshwater and marine representatives. Nova Hedwigia Beiheft 130: 137-162.

Dailey, W. (2004) Oamaru diatomite collection sites. https://diatomsamples.weebly.com/oamaru-diatomite.html.

Desikachary, T.V., and P.M. Sreelatha (1989) Oamaru diatoms. Bibliotheca Diatomologica, Berlin, Band 19, 330 pp plus 145 plates. [Abbreviated here as D&S.]

Edwards, A.R. (compiler) (1991) The Oamaru diatomite. New Zealand Geological Survey Paleontological Bulletin 64, 260 pp.

Guiry, M.D. in Guiry, M.D. & Guiry, G.M. (2016) Rattrayella oamaruensis. AlgaeBase, National University of Ireland, Galway. https://www.algaebase.org; retrieved on 28 February 2023. https://www.algaebase.org/search/species/detail/?species_id=136831

Heck, Paul-Rainer (2015) Die fossilen Diatomeen Oamarus (Neuseeland) aus den Sammlungen von Bernard Hartley und Nigel Charles. Self-published in PDF form.

Kociolek, J.P.; Blanco, S.; Coste, M.; Ector, L.; Liu, Y.; Karthick, B.; Kulikovskiy, M.; Lundholm, N.; Ludwig, T.; Potapova, M.; Rimet, F.; Sabbe, K.; Sala, S.; Sar, E.; Taylor, J.; Van de Vijver, B.; Wetzel, C.E.; Williams, D.M.; Witkowski, A.; Witkowski, J. (2023). DiatomBase. Accessed at https://www.diatombase.org on 2023-04-30. doi:10.14284/504 [Here, Kociolek et al. (2023)]

Miranda, Salvador Valenzuela in Guiry, M.D. & Guiry, G.M. (2016) Ellerbeckia clavigera. AlgaeBase https://www.algaebase.org/search/species/detail/?species_id=147257

Refsnes Data (1999-2023) A school for web developers. https://www.w3schools.com/about/default.asp. [Very useful for writing web applications. Contains many up to date examples of code for web pages.]

Richman, David B and Carter, Richard (2007). Oamaru Diatoms. http://www.microscopy-uk.org.uk/mag/imgjun07/dr-rc-oamaru.pdf.

Ross, Robert (1995) A revision of Rutilaria Greville (Bacillariophyta). Bulletin of the Natural History Museum. Botany series 25(1), 1–93. https://www.biodiversitylibrary.org/item/128057

Round, F.E., Crawford, R.M. & Mann, D.G. (1990). The diatoms: biology and morphology of the genera. pp. [i-ix], 1-747. Cambridge: Cambridge University Press.

Schmidt, A. (0) (1874-1959). Atlas der Diatomaceen-Kunde, von Adolf Schmidt, continued by Martin Schmidt, Friedrich Fricke, Heinrich Heiden, Otto Muller, Friedrich Hustedt. Reprint 1972, 480 plates.

Sims, P.A. (2006) A REVISION OF THE GENUS RATTRAYELLA DE-TONI INCLUDING A DISCUSSION ON RELATED GENERA, Diatom Research, 21:1, 125-158, DOI:10.1080/0269249X.2006.9705656

Spaulding et al. (2021) Glossary. Retrieved on 27 Feb 2023 from https://diatoms.org/glossary.

Spaulding et al. (2023) Taxa by Morphology. Retrieved on 23 Feb 2023 from https://diatoms.org/morphology.

Strelnikova, N.I., Fourtanier, E., and Kociolek, J.P. (2004) MORPHOLOGICAL STUDIES OF AULACODISCUS SPECIES FROM THE “RUSSIAN COLLECTION” OF THE CALIFORNIA ACADEMY OF SCIENCES, Diatom Research, 19:2, 283-310, DOI: 10.1080/0269249X.2004.9705876

Tiffany, Mary Ann (2023) numerous personal communications to identify specimens.

Tiffany, Mary Ann and Hernández-Becerril, David U. (2005) Valve development in the diatom family Asterolampraceae H. L Smith 1872. Micropaleontology, vol. 51, no. 3.

Williams, D.M. (1988) An illustrated catalogue of the type specimens in the Greville diatom herbarium. Bulletin of the British Museum (Natural History), Botany Series Vol 18 No 1.

Witkowski, Jakub (2023a) personal communication.

Witkowski, Jakub (2023b) Fossil diatom atlas (https://fossil-diatoms.com/atlas/index.php?page=atlas-home)

WITKOWSKI, JAKUB, PATRICIA A. SIMS, NINA I. STRELNIKOVA & DAVID M. WILLIAMS (2015) Entogoniopsis gen. nov. and Trilamina gen. nov. (Bacillariophyta): a survey of multipolar pseudocellate diatoms with internal costae, including comments on the genus Sheshukovia Gleser. Phytotaxa 209 (1): 001–089. http://dx.doi.org/10.11646/phytotaxa.209.1.1 [Here, Witkowski et al. (2015).]

Witkowski, Jakub, Patricia A. Sims & David M. Williams (2017) Typification of Eocene–Oligocene diatom taxa proposed by Grove & Sturt (1886–1887) from the Oamaru Diatomite, Diatom Research, 32:4, 363-408. [Here, Witkowski et al. (2017)]

Wikipedia (2023) https://en.wikipedia.org/wiki/Variety_(botany) which refers to the ICN: McNeill, J.; Barrie, F.R.; Buck, W.R.; Demoulin, V.; Greuter, W.; Hawksworth, D.L.; Herendeen, P.S.; Knapp, S.; Marhold, K.; Prado, J.; Prud'homme Van Reine, W.F.; Smith, G.F.; Wiersema, J.H.; Turland, N.J. (2012). International Code of Nomenclature for algae, fungi, and plants (Melbourne Code) adopted by the Eighteenth International Botanical Congress Melbourne, Australia, July 2011. Vol. Regnum Vegetabile 154. A.R.G. Gantner Verlag KG. ISBN 978-3-87429-425-6. Chapter I. Article 4